I don't think anyone can say for sure what was going through Chiarelli's mind regarding Thomas and his contract, or what was (is) going through Thomas's mind regarding his "sabbatical." All we have to go on is second-hand reports, conjecture, and our own mind-sets.
I dont think anyone is claiming to know for sure what was going through Chia or Thomas' minds. If someone did, I missed it anyway. Just a fun sports discussion on an internet message board. Relax.